Nature Search

Publisher Correction: Intestinal crypt microbiota modulates intestinal stem cell turnover and tumorigenesis via indole acetic acid

Shuning Zhang
Lihua Peng
Parag Kundu
Amendments and Corrections06 Mar 2025
Nature Microbiology

Volume: 10, P: 1259
Study on the influencing factors of land desertification degree in Xilingol Grassland

Shuning Liang
Mingguang Diao
Tianze Liu
ResearchOpen Access01 Jul 2025
Scientific Reports

Volume: 15, P: 1-13
Study on dynamic sand collapse mechanism of weakly consolidated rock strata in thick bedrock stope in western China

Liu Zhaoxing
Dong Shuning
Guo Kang
ResearchOpen Access30 Jun 2025
Scientific Reports

Volume: 15, P: 1-16
Olverembatinib combined with venetoclax and reduced-intensity chemotherapy for adult newly diagnosed Philadelphia chromosome-positive acute lymphoblastic leukemia: a single-center, single-arm, phase 2 trial

Xiaoyuan Gong
Wenbin Liu
Jianxiang Wang
Research30 Jun 2025
Leukemia

P: 1-10
Intestinal crypt microbiota modulates intestinal stem cell turnover and tumorigenesis via indole acetic acid

Intestinal crypt-resident Acinetobacter radioresistens secretes indole acetic acid which activates an Ahr-Wnt-β-catenin-EphB2 signalling axis to promote intestinal stem cell homeostasis and prevent tumour initiation and colorectal cancer.

Shuning Zhang
Lihua Peng
Parag Kundu
Research19 Feb 2025
Nature Microbiology

Volume: 10, P: 765-783
The role of regulatory B cell/T follicular helper cell balance in thymoma and thymoma-associated myasthenia gravis

Peng Zhang
Yuxin Liu
Huan Wang
ResearchOpen Access04 Jul 2025
Scientific Reports

Volume: 15, P: 1-12
Efficient crystal structure prediction based on the symmetry principle

This study presents a symmetry principle-biased crystal structure prediction scheme within the MAGUS framework, achieving up to a fourfold performance improvement compared with state-of-the-art methods.

Yu Han
Chi Ding
Jian Sun
Research27 Feb 2025
Nature Computational Science

Volume: 5, P: 255-267
Clinical characteristics of dome-shaped macula in mild myopic or non-myopic eyes

Mengyang Li
Zhi Li
Shuning Li
Research17 Mar 2025
Eye

Volume: 39, P: 1787-1792
Direct time-resolved observation of surface-bound carbon dioxide radical anions on metallic nanocatalysts

Understanding the activity and selectivity of metal catalysts requires elucidating the dynamics of CO₂^•− radicals bound to the surface. Here, the authors use pulse radiolysis to directly observe the stabilization process of CO₂^•− radicals at nanoscale metallic sites from nanoseconds to seconds.

Zhiwen Jiang
Carine Clavaguéra
Mehran Mostafavi
ResearchOpen Access06 Nov 2023
Nature Communications

Volume: 14, P: 1-11
Magnesium oxide-water compounds at megabar pressure and implications on planetary interiors

Magnesium Oxide and water are abundant in the interior of planets. Here, the authors predict three new MgO-H₂O compounds: Mg₂O₃H₂, MgO₃H₄ and MgO₄H₆, and they exhibit superionic behavior in planetary interior conditions.

Shuning Pan
Tianheng Huang
Jian Sun
ResearchOpen Access01 Mar 2023
Nature Communications

Volume: 14, P: 1-9
PDK4-dependent hypercatabolism and lactate production of senescent cells promotes cancer malignancy

PDK4-dependent lactate production by senescent stromal cells is shown to promote cancer growth and drug resistance and might have a broader role in the emergence of age-associated diseases.

Xuefeng Dou
Qiang Fu
Yu Sun
ResearchOpen Access30 Oct 2023
Nature Metabolism

Volume: 5, P: 1887-1910
A synthetic BRET-based optogenetic device for pulsatile transgene expression enabling glucose homeostasis in mice

Pulsing cellular dynamics in genetic circuits have been shown to provide critical capabilities to cells in diverse cellular activities. Here the authors show a synthetic BRET-based transgene expression system that allows pulsatile and quantitative activation of gene expression both in live cells and in vivo.

Ting Li
Xianjun Chen
Yi Yang
ResearchOpen Access27 Jan 2021
Nature Communications

Volume: 12, P: 1-10
Whole Genome Association Study of the Plasma Metabolome Identifies Metabolites Linked to Cardiometabolic Disease in Black Individuals

Most studies of the genetics of the metabolome have been done in individuals of European descent. Here, the authors integrate genomics and metabolomics in Black individuals, highlighting the value of whole genome sequencing in diverse populations and linking circulating metabolites to human disease.

Usman A. Tahir
Daniel H. Katz
Robert E. Gerszten
ResearchOpen Access22 Aug 2022
Nature Communications

Volume: 13, P: 1-16
Aquaporin 9 downregulation in KRAS^G12V colorectal cancer and associated with increased proliferation and decreased apoptosis in cancer cells

Yankui Liu
Jiahao Dou
Xiaowei Qi
ResearchOpen Access10 Apr 2025
Scientific Reports

Volume: 15, P: 1-16
On-chip optoelectronic logic gates operating in the telecom band

Integrating multiple silicon waveguides with black phosphorus enables the realization of a variety of optoelectronic logic gates operating at 1.55 μm.

Ting He
Hui Ma
Weida Hu
Research30 Oct 2023
Nature Photonics

Volume: 18, P: 60-67
Discovery of a selective inhibitor of doublecortin like kinase 1

A highly selective inhibitor of the DCLK1/2 kinases is used to uncover the consequences of DCLK1 inhibition on viability, phosphosignaling and the transcriptome in patient-derived organoid models of pancreatic ductal adenocarcinoma.

Fleur M. Ferguson
Behnam Nabet
Nathanael S. Gray
Research06 Apr 2020
Nature Chemical Biology

Volume: 16, P: 635-643
Fractional order system identification using a joint multi-innovation fractional gradient descent algorithm

Zishuo Wang
Beichen Chen
Shuning Liang
ResearchOpen Access28 Dec 2024
Scientific Reports

Volume: 14, P: 1-17
Author Correction: PDK4-dependent hypercatabolism and lactate production of senescent cells promotes cancer malignancy

Xuefeng Dou
Qiang Fu
Yu Sun
Amendments and CorrectionsOpen Access03 Jun 2024
Nature Metabolism

Volume: 6, P: 1416
Additional fractional gradient descent identification algorithm based on multi-innovation principle for autoregressive exogenous models

Zishuo Wang
Shuning Liang
Hongliang Sun
ResearchOpen Access27 Aug 2024
Scientific Reports

Volume: 14, P: 1-16
Author Correction: PDK4-dependent hypercatabolism and lactate production of senescent cells promotes cancer malignancy

Xuefeng Dou
Qiang Fu
Yu Sun
Amendments and CorrectionsOpen Access01 May 2024
Nature Metabolism

Volume: 6, P: 980
A chloroplast structured photocatalyst enabled by microwave synthesis

Inspired by the favorable configuration of chloroplast, here the authors develop a microwave aided approach for the synthesis of similarly structured photocatalysts. The non-continuously distributed TiO₂ nanomaterials threaded by carbon nanotubes enable a high efficiency for nitric oxide treatment.

Shuning Xiao
Dieqing Zhang
Hexing Li
ResearchOpen Access05 Apr 2019
Nature Communications

Volume: 10, P: 1-10
Lac-Phe mediates the effects of metformin on food intake and body weight

Metformin is shown to trigger production and release of Lac-Phe from gut epithelial cells, which is required for its effects on food intake and loss of body weight.

Shuke Xiao
Veronica L. Li
Jonathan Z. Long
Research18 Mar 2024
Nature Metabolism

Volume: 6, P: 659-669
Loss of ERα induces amoeboid-like migration of breast cancer cells by downregulating vinculin

Estrogen receptor alpha (ERα)-negative cells, which are enriched during endocrine therapy, are associated with metastatic relapse of breast cancer. Here the authors show that ERα inhibits breast cancer metastasis and suggest that ERα suppresses the amoeboid-like migration of breast cancer cells by upregulating vinculin.

Yuan Gao
Zhaowei Wang
Yingqi Zhang
ResearchOpen Access07 Mar 2017
Nature Communications

Volume: 8, P: 1-15
Plasmonic silver quantum dots coupled with hierarchical TiO₂ nanotube arrays photoelectrodes for efficient visible-light photoelectrocatalytic hydrogen evolution

Zichao Lian
Wenchao Wang
Hexing Li
ResearchOpen Access12 Jun 2015
Scientific Reports

Volume: 5, P: 1-10
Comprehensive multiscale analysis of lactate metabolic dynamics in vitro and in vivo using highly responsive biosensors

FiLa biosensors allow real-time subcellular analysis of lactate metabolism. This protocol describes their preparation and characterization, and their use in in vitro and in vivo assays, under various nutritional and pharmacological conditions.

Aoxue Wang
Yejun Zou
Yuzheng Zhao
Protocols02 Feb 2024
Nature Protocols

Volume: 19, P: 1311-1347
Predicting the Mutating Distribution at Antigenic Sites of the Influenza Virus

Hongyang Xu
Yiyan Yang
Zhiwei Cao
ResearchOpen Access03 Feb 2016
Scientific Reports

Volume: 6, P: 1-7
Nomograms for predicting short-term mortality in acute-on-chronic liver disease caused by the combination of hepatitis B virus and alcohol

Hongqin Xu
Hai Li
Yanhang Gao
ResearchOpen Access19 Oct 2024
Scientific Reports

Volume: 14, P: 1-13
The MCL1-specific inhibitor S63845 acts synergistically with venetoclax/ABT-199 to induce apoptosis in T-cell acute lymphoblastic leukemia cells

Zhaodong Li
Shuning He
A. Thomas Look
ResearchOpen Access15 Jul 2018
Leukemia

Volume: 33, P: 262-266
A hybrid local-global neural network for visual classification using raw EEG signals

Shuning Xue
Bu Jin
Jing Liu
ResearchOpen Access08 Nov 2024
Scientific Reports

Volume: 14, P: 1-13
A multi-subject and multi-session EEG dataset for modelling human visual object recognition

Shuning Xue
Bu Jin
Jing Liu
ResearchOpen Access19 Apr 2025
Scientific Data

Volume: 12, P: 1-15
Nasal vaccination of triple-RBD scaffold protein with flagellin elicits long-term protection against SARS-CoV-2 variants including JN.1

Xian Li
Mengxin Xu
Yao-Qing Chen
ResearchOpen Access27 Apr 2024
Signal Transduction and Targeted Therapy

Volume: 9, P: 1-12
Association between periodontitis and cardiometabolic index (CMI): a study from NHANES 2009–2014

Li Shuning
Zhang Zhiyong
Fan Xuhui
ResearchOpen Access18 Nov 2024
Scientific Reports

Volume: 14, P: 1-11
Histamine deficiency aggravates cardiac injury through miR-206/216b-Atg13 axis-mediated autophagic-dependant apoptosis

Suling Ding
Mieradilijiang Abudupataer
Junbo Ge
ResearchOpen Access07 Jun 2018
Cell Death & Disease

Volume: 9, P: 1-20
Piecewise linear neural networks and deep learning

Piecewise linear neural networks (PWLNNs) are a powerful modelling method, particularly in deep learning. In this Primer, Tao et al. introduce the methodology and theoretical analysis of PWLNNs and some of their applications.

Qinghua Tao
Li Li
Johan A. K. Suykens
Reviews09 Jun 2022
Nature Reviews Methods Primers

Volume: 2, P: 1-17
PRR15 deficiency facilitates malignant progression by mediating PI3K/Akt signaling and predicts clinical prognosis in triple-negative rather than non-triple-negative breast cancer

Fengzhu Guo
Jialu Ma
Binghe Xu
ResearchOpen Access18 Apr 2023
Cell Death & Disease

Volume: 14, P: 1-14
Cytoglobin Promotes Cardiac Progenitor Cell Survival against Oxidative Stress via the Upregulation of the NFκB/iNOS Signal Pathway and Nitric Oxide Production

Shuning Zhang
Xiuchun Li
Chuanxi Cai
ResearchOpen Access07 Sept 2017
Scientific Reports

Volume: 7, P: 1-13
Rapid isolation and immune profiling of SARS-CoV-2 specific memory B cell in convalescent COVID-19 patients via LIBRA-seq

Bing He
Shuning Liu
Yao-Qing Chen
ResearchOpen Access17 May 2021
Signal Transduction and Targeted Therapy

Volume: 6, P: 1-12
A triple-RBD-based mucosal vaccine provides broad protection against SARS-CoV-2 variants of concern

Jingyi Yang
Mei-Qin Liu
Huimin Yan
Research11 Oct 2022
Cellular & Molecular Immunology

Volume: 19, P: 1279-1289
FOXP3 inhibits angiogenesis by downregulating VEGF in breast cancer

Xiaoju Li
Yuan Gao
Cun Zhang
ResearchOpen Access03 Jul 2018
Cell Death & Disease

Volume: 9, P: 1-12
Nuclear galectin-1-FOXP3 interaction dampens the tumor-suppressive properties of FOXP3 in breast cancer

Yuan Gao
Xiaoju Li
Cun Zhang
ResearchOpen Access16 Mar 2018
Cell Death & Disease

Volume: 9, P: 1-14
Genomic analysis of lumpy skin disease virus asian variants and evaluation of its cellular tropism

Shijie Xie
Lianxin Cui
Chen Peng
ResearchOpen Access21 Mar 2024
npj Vaccines

Volume: 9, P: 1-11
Association of sleep disorders with subfoveal choroidal thickness in preschool children

Shiya Shen
Xiaoxiao Li
Hu Liu
ResearchOpen Access11 Mar 2021
Eye

Volume: 36, P: 448-456
Distribution of multi-level B cell subsets in thymoma and thymoma-associated myasthenia gravis

Peng Zhang
Yuxin Liu
Ping Wang
ResearchOpen Access01 Feb 2024
Scientific Reports

Volume: 14, P: 1-11
A novel subclonal rearrangement of the STRN3::PDGFRB gene in de novo acute myeloid leukemia with NPM1 mutation and its leukemogenic effects

Zhe Wang
Ting Liu
Shuning Wei
Research07 Aug 2023
Cancer Gene Therapy

Volume: 30, P: 1471-1484
Drought stress triggers proteomic changes involving lignin, flavonoids and fatty acids in tea plants

Honglian Gu
Yu Wang
Zhaotang Ding
ResearchOpen Access23 Sept 2020
Scientific Reports

Volume: 10, P: 1-11
A novel NF-κB/YY1/microRNA-10a regulatory circuit in fibroblast-like synoviocytes regulates inflammation in rheumatoid arthritis

Nan Mu
Jintao Gu
Yingqi Zhang
ResearchOpen Access29 Jan 2016
Scientific Reports

Volume: 6, P: 1-14
DYNC2H1 hypomorphic or retina-predominant variants cause nonsyndromic retinal degeneration

Anjali Vig
James A. Poulter
Elise Heon
ResearchOpen Access05 Aug 2020
Genetics in Medicine

Volume: 22, P: 2041-2051
Anti-Infective Effect of Adhesive Probiotic Lactobacillus in Fish is Correlated With Their Spatial Distribution in the Intestinal Tissue

Suxu He
Chao Ran
Zhigang Zhou
ResearchOpen Access16 Oct 2017
Scientific Reports

Volume: 7, P: 1-12
Genomic and transcriptomic analyses of Agrobacterium tumefaciens S33 reveal the molecular mechanism of a novel hybrid nicotine-degrading pathway

Haiyan Huang
Wenjun Yu
Shuning Wang
ResearchOpen Access06 Jul 2017
Scientific Reports

Volume: 7, P: 1-12

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